Nima Shoghi
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Projects

Research projects and interactive demos

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STAR-MD

2026PublishedFeatured

Scalable Spatio-Temporal SE(3) Diffusion for Long-Horizon Protein Dynamics

A scalable SE(3)-equivariant diffusion model that generates physically plausible protein trajectories over microsecond timescales using a causal diffusion transformer with joint spatiotemporal attention.

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MatterTune

2025PublishedFeatured

Fine-Tuning Atomistic Foundation Models for Materials Discovery

An open-source platform for fine-tuning state-of-the-art atomistic foundation models (UMA, JMP, EquiformerV2, MACE, MatterSim, ORB, etc.) with intuitive interfaces for computational chemists. Features parameter-efficient fine-tuning, message-passing pruning, and graph partitioning for accelerating foundation models.

JMP thumbnail

JMP

2024PublishedFeatured

Joint Multi-domain Pre-training for Atomic Property Prediction

A supervised pre-training strategy that leverages diverse data to advance atomic property prediction across chemical domains.

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